{ "_id": "6a1bf5f91d7bb097a0a26302", "Package": "causalCmprsk", "Type": "Package", "Title": "Nonparametric and Cox-Based Estimation of Average Treatment\nEffects in Competing Risks", "Version": "2.0.0", "Authors@R": "c(person(\"Bella\", \"Vakulenko-Lagun\", email =\"blagun@stat.haifa.ac.il\", role = c(\"aut\", \"cre\")),\nperson(\"Colin\", \"Magdamo\", role = c(\"aut\")),\nperson(\"Marie-Laure\", \"Charpignon\", role = c(\"aut\")),\nperson(\"Bang\", \"Zheng\", role = c(\"aut\")),\nperson(\"Mark\", \"Albers\", role = c(\"aut\")),\nperson(\"Sudeshna\", \"Das\", role = c(\"aut\")))", "Description": "Estimation of average treatment effects (ATE) of point\ninterventions on time-to-event outcomes with K competing risks\n(K can be 1). The method uses propensity scores and inverse\nprobability weighting for emulation of baseline randomization,\nwhich is described in Charpignon et al. (2022)\n.", "License": "GPL (>= 2)", "Encoding": "UTF-8", "RoxygenNote": "7.2.3", "VignetteBuilder": "knitr", "URL": "https://github.com/Bella2001/causalCmprsk", "BugReports": "https://github.com/Bella2001/causalCmprsk/issues", "Repository": "https://bella2001.r-universe.dev", "Date/Publication": "2023-07-04 14:35:05 UTC", "RemoteUrl": "https://github.com/bella2001/causalcmprsk", "RemoteRef": "HEAD", "RemoteSha": "af47e890267917ed3a4649254b287da4caf615fa", "NeedsCompilation": "no", "Packaged": { "Date": "2026-05-31 08:45:16 UTC", "User": "root" }, "Author": "Bella Vakulenko-Lagun [aut, cre],\nColin Magdamo [aut],\nMarie-Laure Charpignon [aut],\nBang Zheng [aut],\nMark Albers [aut],\nSudeshna Das [aut]", "Maintainer": "Bella Vakulenko-Lagun ", "MD5sum": "776df2c1b58f9ab8b6083933373913a7", "_user": "bella2001", "_type": "src", "_file": "causalCmprsk_2.0.0.tar.gz", "_fileid": "88a63b9a90c3a70a4cafc8a802c0470aee9858ee9a4d7c1cd4c901d97ddb6947", "_filesize": 425463, "_sha256": "88a63b9a90c3a70a4cafc8a802c0470aee9858ee9a4d7c1cd4c901d97ddb6947", "_created": "2026-05-31T08:45:16.000Z", "_published": "2026-05-31T08:48:57.391Z", "_distro": "noble", "_jobs": [ { "job": 78712984748, "time": 159, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "7315347599" }, { "job": 78712984753, "time": 152, "config": "linux-release-x86_64", "r": "4.6.0", "check": "OK", "artifact": "7315346817" }, { "job": 78712984722, "time": 183, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "OK", "artifact": "7315347392" }, { "job": 78712984735, "time": 144, "config": "macos-release-arm64", "r": "4.6.0", "check": "OK", "artifact": "7315344096" }, { "job": 78712765705, "time": 234, "config": "source", "r": "4.6.0", "check": "OK", "artifact": "7315331596" }, { "job": 78712984716, "time": 133, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "7315345093" }, { "job": 78712984729, "time": 135, "config": "windows-devel", "r": "4.7.0", "check": "OK", "artifact": "7315345309" }, { "job": 78712984730, "time": 114, "config": "windows-oldrel", "r": "4.5.3", "check": "OK", "artifact": "7315343322" }, { "job": 78712984750, "time": 113, "config": "windows-release", "r": "4.6.0", "check": "OK", "artifact": "7315343251" } ], "_buildurl": "https://github.com/r-universe/bella2001/actions/runs/26707971745", "_status": "success", "_host": "GitHub-Actions", "_upstream": "https://github.com/bella2001/causalcmprsk", "_commit": { "id": "af47e890267917ed3a4649254b287da4caf615fa", "author": "BLAGUN-8063\\blagun ", "committer": "BLAGUN-8063\\blagun ", "message": "1. Using survival package for estiamtion of cumulative hazards and CIFs.\n2. Adding a formula argument for the TRT-Covariates relationship (a propensity scores model) in 3 fucntions: get.weights(), fit.cox() and fit.nonpar().\n", "time": 1688481305 }, "_maintainer": { "name": "Bella Vakulenko-Lagun", "email": "blagun@stat.haifa.ac.il" }, "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 4.0.0", "role": "Depends" }, { "package": "survival", "role": "Imports" }, { "package": "inline", "role": "Imports" }, { "package": "doParallel", "role": "Imports" }, { "package": "parallel", "role": "Imports" }, { "package": "utils", "role": "Imports" }, { "package": "foreach", "role": "Imports" }, { "package": "data.table", "role": "Imports" }, { "package": "purrr", "role": "Imports" }, { "package": "methods", "role": "Imports" }, { "package": "knitr", "role": "Suggests" }, { "package": "rmarkdown", "role": "Suggests" }, { "package": "bookdown", "role": "Suggests" }, { "package": "tidyverse", "role": "Suggests" }, { "package": "ggalt", "role": "Suggests" }, { "package": "cobalt", "role": "Suggests" }, { "package": "ggsci", "role": "Suggests" }, { "package": "modEvA", "role": "Suggests" }, { "package": "naniar", "role": "Suggests" }, { "package": "DT", "role": "Suggests" }, { "package": "Hmisc", "role": "Suggests" }, { "package": "hrbrthemes", "role": "Suggests" }, { "package": "summarytools", "role": "Suggests" } ], "_owner": "bella2001", "_selfowned": true, "_usedby": 0, "_updates": [], "_tags": [], "_stars": 3, "_contributors": [ { "user": "bella2001", "count": 11, "uuid": 26797423 }, { "user": "cmagdamo254", "count": 6, "uuid": 68395332 }, { "user": "cmagdamo", "count": 2, "uuid": 64744501 } ], "_userbio": { "uuid": 26797423, "type": "user", "name": "Bella2001" }, "_downloads": { "count": 184, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/causalCmprsk" }, "_devurl": "https://github.com/bella2001/causalcmprsk", "_searchresults": 8, "_rbuild": "4.6.0", "_assets": [ "extra/causalCmprsk.html", "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/readme.html", "extra/readme.md", "manual.pdf" ], "_homeurl": "https://github.com/bella2001/causalcmprsk", "_realowner": "bella2001", "_cranurl": true, "_releases": [ { "version": "1.0.0", "date": "2020-11-03" }, { "version": "1.0.1", "date": "2021-01-05" }, { "version": "1.0.2", "date": "2021-08-09" }, { "version": "1.0.3", "date": "2021-08-09" }, { "version": "1.1.0", "date": "2023-03-31" }, { "version": "2.0.0", "date": "2023-07-04" } ], "_exports": [ "fit.cox", "fit.nonpar", "get.numAtRisk", "get.pointEst", "get.weights" ], "_help": [ { "page": "causalCmprsk", "title": "Estimation of Average Treatment Effects (ATE) of Point Intervention on Time-to-Event Outcomes with Competing Risks", "topics": [ "causalCmprsk" ] }, { "page": "fit.cox", "title": "Cox-based estimation of ATE corresponding to the target population", "topics": [ "fit.cox" ] }, { "page": "fit.nonpar", "title": "Nonparametric estimation of ATE corresponding to the target population", "topics": [ "fit.nonpar" ] }, { "page": "get.numAtRisk", "title": "Number-at-risk in raw and weighted data", "topics": [ "get.numAtRisk" ] }, { "page": "get.pointEst", "title": "Returns point estimates and 'conf.level'% confidence intervals corresponding to a specific time point", "topics": [ "get.pointEst" ] }, { "page": "get.weights", "title": "Fitting a logistic regression model for propensity scores and estimating weights", "topics": [ "get.weights" ] }, { "page": "summary.cmprsk", "title": "Summary of Event-specific Cumulative Hazards, Cumulative Incidence Functions and Various Treatment Effects", "topics": [ "summary.cmprsk" ] } ], "_readme": "https://github.com/bella2001/causalcmprsk/raw/HEAD/README.md", "_rundeps": [ "cli", "codetools", "data.table", "doParallel", "foreach", "glue", "inline", "iterators", "lattice", "lifecycle", "magrittr", "Matrix", "purrr", "rlang", "survival", "vctrs" ], "_vignettes": [ { "source": "cmp_rsk_RHC.Rmd", "filename": "cmp_rsk_RHC.html", "title": "Nonparametric and Cox-based estimation of average treatment effects in competing risks using 'causalCmprsk' package", "author": "Bella Vakulenko-Lagun, Colin Magdamo, Marie-Laure Charpignon, Bang Zheng, Mark Albers, Sudeshna Das", "engine": "knitr::rmarkdown", "headings": [ "Why causalCmprsk?", "Analysis of RHC data", "Reading, cleaning and preparing data", "Fitting PS model and its diagnostics", "Testing goodness-of-fit of a PS model", "Checking overlap", "Estimation of weights and balance diagnostics", "Characterizing the target population", "Estimating the effect of RHC on the length-of-stay", "Graphical test of a proportional hazards assumption", "Estimating cause-specific hazards, risk and RMT", "Comparing cause-specific hazards over 3 populations", "Cause-specific cumulative hazards for stabilized ATE weights", "Risk curves or cumulative incidence functions (CIF) for stabilized ATE weights", "RMT for stabilized ATE weights", "Estimating treatment effects for stabilized ATE weights", "Estimating treatment effect on the composite Length-of-Stay (LOS) for stabilized ATE weights", "Estimating the effect of RHC on 30-day survival for stabilized ATE weights", "Graphical test of a proportional hazards assumption", "Estimating risk difference", "Estimating risk ratio", "Estimating difference in RMT", "References" ], "created": "2020-08-31 15:15:23", "modified": "2023-07-04 14:35:05", "commits": 9 } ], "_score": 4.477121254719663, "_indexed": true, "_nocasepkg": "causalcmprsk", "_universes": [ "bella2001" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "2.0.0", "date": "2026-05-31T08:47:41.000Z", "distro": "noble", "commit": "af47e890267917ed3a4649254b287da4caf615fa", "fileid": "1130b3de3fa86727706146f075455d0f269febad1961309ed626313aafaec238", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/bella2001/actions/runs/26707971745" }, { "r": "4.6.0", "os": "linux", "version": "2.0.0", "date": "2026-05-31T08:47:34.000Z", "distro": "noble", "commit": "af47e890267917ed3a4649254b287da4caf615fa", "fileid": "e271e43edb78a27154c7ba9726292e4f9c53d46f2830d9f5452197283f334c60", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/bella2001/actions/runs/26707971745" }, { "r": "4.5.3", "os": "mac", "version": "2.0.0", "date": "2026-05-31T08:47:49.000Z", "commit": "af47e890267917ed3a4649254b287da4caf615fa", "fileid": "549a2f49a217458eb1697243c85bfd0331a8cf531a0d6ad0fff80236c6b564a3", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/bella2001/actions/runs/26707971745" }, { "r": "4.6.0", "os": "mac", "version": "2.0.0", "date": "2026-05-31T08:47:15.000Z", "commit": "af47e890267917ed3a4649254b287da4caf615fa", "fileid": "8deaa53312599d3f80ff6e1ab3b15b7556addd296b2a166878b7efde6989e723", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/bella2001/actions/runs/26707971745" }, { "r": "4.6.0", "os": "wasm", "version": "2.0.0", "date": "2026-05-31T08:47:49.000Z", "commit": "af47e890267917ed3a4649254b287da4caf615fa", "fileid": "c885d27cc4fea98e54a97b4cb3547dea5982696aacb319a965dd6c0db82abb54", "status": "success", "buildurl": "https://github.com/r-universe/bella2001/actions/runs/26707971745" }, { "r": "4.7.0", "os": "win", "version": "2.0.0", "date": "2026-05-31T08:47:04.000Z", "commit": "af47e890267917ed3a4649254b287da4caf615fa", "fileid": "f8fcc4aa8212a7eb1dfa58f3a36b6ca226e1c64b8c51c10885ca07962ab67055", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/bella2001/actions/runs/26707971745" }, { "r": "4.5.3", "os": "win", "version": "2.0.0", "date": "2026-05-31T08:46:51.000Z", "commit": "af47e890267917ed3a4649254b287da4caf615fa", "fileid": "ddb6842f9d4d474781b7ded7702635f4ab5bea014aa9af32abdad0e93fc30f15", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/bella2001/actions/runs/26707971745" }, { "r": "4.6.0", "os": "win", "version": "2.0.0", "date": "2026-05-31T08:46:52.000Z", "commit": "af47e890267917ed3a4649254b287da4caf615fa", "fileid": "c55c29645d1b915240a9174762009aca12586059a00b8e6d972c611680b9afbb", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/bella2001/actions/runs/26707971745" } ] }